BMRB Entry 18403

Title:
1H,13C and 15N resonance assignment of the UIM-SH3 construct of the STAM2 protein
Deposition date:
2012-04-16
Original release date:
2012-07-17
Authors:
Lange, Anja; Ismail, Mouhamad-Baligh; Riviere, Gwladys; Hologne, Maggy; Guilliere, Florence; Lancelin, Jean-Marc; Krimm, Isabelle; Walker, Olivier
Citation:

Citation: Lange, Anja; Ismail, Mouhamad-Baligh; Riviere, Gwladys; Hologne, Maggy; Lacabanne, Denis; Guilliere, Florence; Lancelin, Jean-Marc; Krimm, Isabelle; Walker, Olivier. "Competitive binding of UBPY and ubiquitin to the STAM2 SH3 domain revealed by NMR."  FEBS Lett. 586, 3379-3384 (2012).
PubMed: 22841719

Assembly members:

Assembly members:
UIM-SH3_domains_of_STAM2, polymer, 109 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pETEM-60

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts194
15N chemical shifts104
1H chemical shifts104

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1UIM-SH3 monomer1

Entities:

Entity 1, UIM-SH3 monomer 109 residues - Formula weight is not available

1   GLYALAMETGLYMETASNLYSASNLYSGLU
2   ASPGLUASPILEALALYSALAILEGLULEU
3   SERLEUGLNGLUGLNLYSGLNGLNHISTHR
4   GLUTHRLYSSERLEUTYRPROSERSERGLU
5   ILEGLNLEUASNASNLYSVALALAARGLYS
6   VALARGALALEUTYRASPPHEGLUALAVAL
7   GLUASPASNGLULEUTHRPHELYSHISGLY
8   GLUILEILEILEVALLEUASPASPSERASP
9   ALAASNTRPTRPLYSGLYGLUASNHISARG
10   GLYILEGLYLEUPHEPROSERASPPHEVAL
11   THRTHRASNLEUASNILEGLUTHRGLU

Samples:

sample_1: UIM-SH3 domains of STAM2, [U-13C; U-15N], 200-400 uM; sodium phosphate 20 mM; sodium azide 0.02%

sample_conditions_1: ionic strength: 20 mM; pH: 6.8; pressure: 1 atm; temperature: 288 K

Experiments:

NameSampleSample stateSample conditions
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1

Software:

VNMRJ, Varian - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

PDB
DBJ BAF84954 BAF85536 BAG72771 BAK62690
EMBL CAB63735 CAL38297
GB AAC63963 AAC63964 AAH28740 AAY14712 ABM83353
REF NP_001267210 NP_005834 XP_003275024 XP_003776054 XP_003832773
SP O75886
AlphaFold O75886

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks