BMRB Entry 17998

Title:
Resonance assignments of the PPIase domain of FKBP42 from Arabidopsis thaliana
Deposition date:
2011-10-14
Original release date:
2012-10-01
Authors:
Burgardt, Noelia; Linnert, Miriam; Weiwad, Matthias; Geisler, Markus; Luecke, Christian
Citation:

Citation: Burgardt, Noelia; Linnert, Miriam; Weiwad, Matthias; Geisler, Markus; Luecke, Christian. "NMR assignments of the FKBP-type PPIase domain of FKBP42 from Arabidopsis thaliana"  Biomol. NMR Assignments 6, 185-188 (2012).
PubMed: 22198817

Assembly members:

Assembly members:
FKBP42, polymer, 180 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Thale cress   Taxonomy ID: 3702   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET28a

Data sets:
Data typeCount
13C chemical shifts682
15N chemical shifts170
1H chemical shifts170

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1FKBP421

Entities:

Entity 1, FKBP42 180 residues - Formula weight is not available

1   METASPGLUSERLEUGLUHISGLNTHRGLN
2   THRHISASPGLNGLUSERGLUILEVALTHR
3   GLUGLYSERALAVALVALHISSERGLUPRO
4   SERGLNGLUGLYASNVALPROPROLYSVAL
5   ASPSERGLUALAGLUVALLEUASPGLULYS
6   VALSERLYSGLNILEILELYSGLUGLYHIS
7   GLYSERLYSPROSERLYSTYRSERTHRCYS
8   PHELEUHISTYRARGALATRPTHRLYSASN
9   SERGLNHISLYSPHEGLUASPTHRTRPHIS
10   GLUGLNGLNPROILEGLULEUVALLEUGLY
11   LYSGLULYSLYSGLULEUALAGLYLEUALA
12   ILEGLYVALALASERMETLYSSERGLYGLU
13   ARGALALEUVALHISVALGLYTRPGLULEU
14   ALATYRGLYLYSGLUGLYASNPHESERPHE
15   PROASNVALPROPROMETALAASPLEULEU
16   TYRGLUVALGLUVALILEGLYPHEASPGLU
17   THRLYSGLUGLYLYSALAARGSERASPMET
18   THRVALGLUGLUARGILEGLYALAALAASP

Samples:

sample_1: FKBP42, [U-15N], 0.7 mM; sodium phosphate 10 mM; sodium azide 0.05 mM

sample_2: FKBP42, [U-13C; U-15N], 2 mM; sodium phosphate 10 mM; sodium azide 0.05 mM

sample_conditions_1: ionic strength: 10 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-15N TROSYsample_2isotropicsample_conditions_1
2D 1H-13C HSQCsample_2isotropicsample_conditions_1
3D HNCAsample_2isotropicsample_conditions_1
3D HNCACBsample_2isotropicsample_conditions_1
3D HNCOsample_2isotropicsample_conditions_1
3D HN(CA)COsample_2isotropicsample_conditions_1
3D CC(CO)NHsample_2isotropicsample_conditions_1
3D H(CC)(CO)NHsample_2isotropicsample_conditions_1
3D HNCACBsample_2isotropicsample_conditions_1

Software:

xwinnmr, Bruker Biospin - collection, processing

SPARKY, Goddard - data analysis

NMR spectrometers:

  • Bruker DRX 500 MHz
  • Bruker Avance 800 MHz

Related Database Links:

PDB
DBJ BAB02359
EMBL CAC00654
GB AAM13008 AAN65079 AEE76533
REF NP_188801
SP Q9LDC0
AlphaFold Q9LDC0

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks