BMRB Entry 4938

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PDB ID: 1i17
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4938
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Two Different Neurodegenerative Diseases Caused by Proteins with Similiar Structures

Deposition date:

2001-01-11

Original release date:

2001-08-22

Authors:

Mo, Huaping; Moore, Richard; Cohen, Fred; Westway, David; Prusiner, Stanley; Wright, Peter; Dyson, H.

Citation:

Citation: Mo, Huaping; Moore, Richard; Cohen, Fred; Westaway, David; Prusiner, Stanley; Wright, Peter; Dyson, H.. "Two Different Neurodegenerative Diseases Caused by Proteins with Similiar Structures" Proc. Natl. Acad. Sci. U. S. A. 98, 2352-2357 (2001).
PubMed: 11226243

Assembly members:

Assembly members:
mouse doppel, polymer, 132 residues, 15096 Da.

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
mouse doppel: ARGIKHRFKWNRKVLPSSGG QITEARVAENRPGAFIKQGR KLDIDFGAEGNRYYAANYWQ FPDGIYYEGCSEANVTKEML VTSCVNATQAANQAEFSREK QDSKLHQRVLWRLIKEICSA KHCDFWLERGAA

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	941
13C chemical shifts	590
15N chemical shifts	154

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	mdpl	1

Entities:

Entity 1, mdpl 132 residues - 15096 Da.

1

ALA

ARG

GLY

ILE

LYS

HIS

ARG

PHE

LYS

TRP

2

ASN

ARG

LYS

VAL

LEU

PRO

SER

GLY

3

GLN

ILE

THR

GLU

ALA

ARG

VAL

ALA

GLU

ASN

4

ARG

PRO

GLY

ALA

PHE

ILE

LYS

GLN

GLY

ARG

5

LYS

LEU

ASP

ILE

ASP

PHE

GLY

ALA

GLU

GLY

6

ASN

ARG

TYR

ALA

ASN

TYR

TRP

GLN

7

PHE

PRO

ASP

GLY

ILE

TYR

GLU

GLY

CYS

8

SER

GLU

ALA

ASN

VAL

THR

LYS

GLU

MET

LEU

9

VAL

THR

SER

CYS

VAL

ASN

ALA

THR

GLN

ALA

10

ALA

ASN

GLN

ALA

GLU

PHE

SER

ARG

GLU

LYS

11

GLN

ASP

SER

LYS

LEU

HIS

GLN

ARG

VAL

LEU

12

TRP

ARG

LEU

ILE

LYS

GLU

ILE

CYS

SER

ALA

13

LYS

HIS

CYS

ASP

PHE

TRP

LEU

GLU

ARG

GLY

14

ALA

Samples:

sample_1: mouse doppel, [U-15N], 3 mM

sample_2: mouse doppel, [U-15N; U-13N], 2 mM

ex-cond1: pH: 5.2; temperature: 299 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Bruker Avance 600 MHz

PDB	1I17
DBJ	BAC31436 BAE36166
GB	AAD52000 AAF02544 AAF02545 AAF09196 AAF09197
REF	NP_001119810 NP_001265186 NP_001265187 NP_001265188 NP_001265449
SP	Q9QUG3
AlphaFold	Q9QUG3