BMRB Entry 34349

Title:
[41-82]Gga-AvBD11
Deposition date:
2019-01-08
Original release date:
2019-12-13
Authors:
Meudal, H.; Loth, K.; Delmas, A.; Landon, C.
Citation:

Citation: Guyot, N.; Meudal, H.; Trapp, S.; Iochmann, S.; Silvestre, A.; Jousset, G.; Labas, V.; Reverdiau, P.; Loth, K.; Herve, V.; Aucagne, V.; Delmas, A.; Rehault-Godbert, S.; Landon, C.. "Structure, function, and evolution of Gga-AvBD11, the archetype of a structural avian-double-beta-defensin family"  Proc. Natl. Acad. Sci. U.S.A. 117, 337-345 (2020).
PubMed: 31871151

Assembly members:

Assembly members:
entity_1, polymer, 42 residues, 4788.552 Da.

Natural source:

Natural source:   Common Name: Chicken   Taxonomy ID: 9031   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Gallus gallus

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: DTTSDFHTCQDKGGHCVSPK IRCLEEQLGLCPLKRWTCCK EI

Data sets:
Data typeCount
13C chemical shifts139
15N chemical shifts39
1H chemical shifts287

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 42 residues - 4788.552 Da.

1   ASPTHRTHRSERASPPHEHISTHRCYSGLN
2   ASPLYSGLYGLYHISCYSVALSERPROLYS
3   ILEARGCYSLEUGLUGLUGLNLEUGLYLEU
4   CYSPROLEULYSARGTRPTHRCYSCYSLYS
5   GLUILE

Samples:

sample_1: [41-82]Gga-AvBD11 1.4 mM

sample_conditions_1: ionic strength: 0 mM; pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1

Software:

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

ARIA, Linge, O'Donoghue and Nilges - structure calculation

CcpNmr Analysis, CCPN - chemical shift assignment, peak picking

NMR spectrometers:

  • Bruker AVANCE III HD 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks