BMRB Entry 18982

Title:
Transcriptional regulatory protein
Deposition date:
2013-01-28
Original release date:
2013-12-09
Authors:
de Chiara, Cesira; Kelly, Geoff; Pastore, Annalisa
Citation:

Citation: de Chiara, Cesira; Menon, Rajesh; Kelly, Geoff; Pastore, Annalisa. "Protein-Protein Interactions as a Strategy towards Protein-Specific Drug Design: The Example of Ataxin-1"  PLoS One 8, e76456-e76456 (2013).
PubMed: 24155902

Assembly members:

Assembly members:
CIC_polypeptide, polymer, 15 residues, 1726.026 Da.
Ataxin-1_AXH, polymer, 126 residues, 13517.461 Da.

Natural source:

Natural source:   Common Name: Humans   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: chemical synthesis   Host organism: Escherichia coli   Vector: n/a

Data sets:
Data typeCount
13C chemical shifts390
15N chemical shifts124
1H chemical shifts906

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CIC_polypeptide1
2Ataxin-1_AXH2

Entities:

Entity 1, CIC_polypeptide 15 residues - 1726.026 Da.

1   VALPHEPROTRPHISSERLEUVALPROPHE
2   LEUALAPROSERGLN

Entity 2, Ataxin-1_AXH 126 residues - 13517.461 Da.

1   GLYALAMETALAPROPROTHRLEUPROPRO
2   TYRPHEMETLYSGLYSERILEILEGLNLEU
3   ALAASNGLYGLULEULYSLYSVALGLUASP
4   LEULYSTHRGLUASPPHEILEGLNSERALA
5   GLUILESERASNASPLEULYSILEASPSER
6   SERTHRVALGLUARGILEGLUASPSERHIS
7   SERPROGLYVALALAVALILEGLNPHEALA
8   VALGLYGLUHISARGALAGLNVALSERVAL
9   GLUVALLEUVALGLUTYRPROPHEPHEVAL
10   PHEGLYGLNGLYTRPSERSERCYSCYSPRO
11   GLUARGTHRSERGLNLEUPHEASPLEUPRO
12   CYSSERLYSLEUSERVALGLYASPVALCYS
13   ILESERLEUTHRLEULYS

Samples:

sample_1: Ataxin-1 AXH domain, [U-100% 13C; U-100% 15N], 0.5 mM; CIC polypeptide 0.6 mM; H2O 90 mM; D2O 10 mM

sample_2: Ataxin-1 AXH domain, [U-100% 15N], 0.5 mM; CIC polypeptide 0.6 mM; H2O 90 mM; D2O 10 mM

sample_conditions_1: ionic strength: 20 mM; pH: 6.8; pressure: 1 atm; temperature: 310 K

Experiments:

NameSampleSample stateSample conditions
3D 1H-15N NOESYsample_2isotropicsample_conditions_1
3D 1H-15N TOCSYsample_2isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D 15N-13C-filtered, 15N-13C-edited NOESYsample_1isotropicsample_conditions_1
2D 15N-13C-rejected NOESYsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1

Software:

ARIA v2.3, Linge, O'Donoghue and Nilges - automated NOEs assignment, refinement, structure solution

XEASY, Bartels et al. - data analysis, peak picking

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Varian INOVA 800 MHz
  • Bruker Avance 700 MHz
  • Bruker Avance 600 MHz
  • Varian INOVA 600 MHz

Related Database Links:

UNP Q96RK0 P54253
PDB
DBJ BAE27813 BAE27978 BAI45609 BAP18650 BAC33290
GB AAI40444 AAI52805 AAK73515 AAK73516 ABD61704 AAH58178 AAI17126 ADR83271 AIC49678 EAW55372
REF NP_001289740 NP_001291744 NP_055940 NP_082158 XP_001153776 NP_000323 NP_001121636 NP_001186233 NP_033150 NP_036858
SP Q924A2 Q96RK0 P54253 P54254 Q63540
EMBL CAA55793 CAA58533 CAA62822
PRF 2210312A
AlphaFold Q9Y6T1 Q9Y4J1 Q924A2 Q96RK0 P54253 Q63540 P54254

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks