BMRB Entry 11232

Title:
Solution structure of the PKD domain (329-428) from human KIAA0319
Deposition date:
2010-07-23
Original release date:
2011-08-03
Authors:
Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.
Citation:

Citation: Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the PKD domain (329-428) from human KIAA0319"  .

Assembly members:

Assembly members:
PKD domain, polymer, 113 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P051121-06

Data sets:
Data typeCount
13C chemical shifts475
15N chemical shifts107
1H chemical shifts750

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PKD domain1

Entities:

Entity 1, PKD domain 113 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYPROARGTHR
2   VALLYSGLULEUTHRVALSERALAGLYASP
3   ASNLEUILEILETHRLEUPROASPASNGLU
4   VALGLULEULYSALAPHEVALALAPROALA
5   PROPROVALGLUTHRTHRTYRASNTYRGLU
6   TRPASNLEUILESERHISPROTHRASPTYR
7   GLNGLYGLUILELYSGLNGLYHISLYSGLN
8   THRLEUASNLEUSERGLNLEUSERVALGLY
9   LEUTYRVALPHELYSVALTHRVALSERSER
10   GLUASNALAPHEGLYGLUGLYPHEVALASN
11   VALTHRVALLYSPROALAARGSERGLYPRO
12   SERSERGLY

Samples:

sample_1: PKD domain, [U-13C; U-15N], 1.16 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9816, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Varian INOVA 800 MHz

Related Database Links:

PDB
REF XP_009448870 XP_011513329

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks