BMRB Entry 7309

Name: Backbone 1H, 13C, 15N Chemical Shift Assignments for HIV-1 myristoylated matrix protein
Published: 2006-10-20

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7309

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C, 15N Chemical Shift Assignments for HIV-1 myristoylated matrix protein

Deposition date:

2006-09-28

Original release date:

2006-10-20

Authors:

Saad, Jamil; Miller, Jaime; Tai, Janet; Kim, Andrew; Ghanam, Ruba; Summers, Michael

Citation:

Citation: Saad, Jamil; Miller, Jaime; Tai, Janet; Kim, Andrew; Ghanam, Ruba; Summers, Michael. "Structural Basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly" Proc. Natl. Acad. Sci. U.S.A. 103, 11364-11369 (2006).
PubMed: 16840558

Assembly members:

Assembly members:
myristyl matrix protein, polymer, 132 residues, Formula weight is not available

Natural source:

Natural source: Common Name: HIV-1 Taxonomy ID: 11676 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus HIV-1

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
myristyl matrix protein: XGARASVLSGGELDKWEKIR LRPGGKKQYKLKHIVWASRE LERFAVNPGLLETSEGCRQI LGQLQPSLQTGSEELRSLYN TIAVLYCVHQRIDVKDTKEA LDKIEEEQNKSKKKAQQAAA DTGNNSQVSQNY

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	432
15N chemical shifts	129
1H chemical shifts	765

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HIV-1 myristoylated Matrix protein	1

Entities:

Entity 1, HIV-1 myristoylated Matrix protein 132 residues - Formula weight is not available

1

MYR

GLY

ALA

ARG

ALA

SER

VAL

LEU

SER

GLY

2

GLY

GLU

LEU

ASP

LYS

TRP

GLU

LYS

ILE

ARG

3

LEU

ARG

PRO

GLY

LYS

GLN

TYR

LYS

4

LEU

LYS

HIS

ILE

VAL

TRP

ALA

SER

ARG

GLU

5

LEU

GLU

ARG

PHE

ALA

VAL

ASN

PRO

GLY

LEU

6

LEU

GLU

THR

SER

GLU

GLY

CYS

ARG

GLN

ILE

7

LEU

GLY

GLN

LEU

GLN

PRO

SER

LEU

GLN

THR

8

GLY

SER

GLU

LEU

ARG

SER

LEU

TYR

ASN

9

THR

ILE

ALA

VAL

LEU

TYR

CYS

VAL

HIS

GLN

10

ARG

ILE

ASP

VAL

LYS

ASP

THR

LYS

GLU

ALA

11

LEU

ASP

LYS

ILE

GLU

GLN

ASN

LYS

12

SER

LYS

ALA

GLN

ALA

13

ASP

THR

GLY

ASN

SER

GLN

VAL

SER

GLN

14

ASN

TYR

Samples:

sample_1: Matrix protein, [U-13C; U-15N], 0.3 mM; sodium phosphate 50 mM; DTT 5 mM

conditions_1: pH: 5.5; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	sample_1	not available	conditions_1
1H,1H-NOESY	sample_1	not available	conditions_1
3D 13C-edited NOESY	sample_1	not available	conditions_1
3D 15N-edited NOESY	sample_1	not available	conditions_1
4D 13C-,15N-edited NOESY	sample_1	not available	conditions_1
3D double-half-filtered NOESY	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker DRX 600 MHz
Bruker DMX 800 MHz

BMRB	15114 15116 18715 18716 5316 5960 7250 7267 7275
PDB	1HIW 1L6N 1UPH 2GOL 2H3F 2H3I 2H3Q 2H3V 2H3Z 2HMX 2JMG 2LYA 2LYB 2NV3 4JMU
DBJ	BAF34641 BAG48474
EMBL	CBI61180 CBI61181 CBI61182 CBI61183 CBI61184
GB	AAA44987 AAB00898 AAB60571 AAC28445 AAC29216
SP	P12493 P12497
AlphaFold	P12493 P12497