Creating HTML hyperlinks to BMRB entries

Via PDB ID

Use http://www.bmrb.wisc.edu/srv/find/pdb/ID
where ID is PDB id.
Example: http://www.bmrb.wisc.edu/srv/find/pdb/1brv

Via accession number

CGI API

Use explore.cgi CGI script: http://www.bmrb.wisc.edu/cgi-bin/explore.cgi?bmrbId=1000 displays HTML summary for BMRB accession number 1000). The script requires one parameter: bmrbId. Value of this parameter is BMRB accession number to display.

The script also accepts optional parameter: format=raw. http://www.bmrb.wisc.edu/explore.cgi?format=raw&bmrbId=1000 displays raw NMR-STAR file for BMRB accession number 1000.

REST API

• http://rest.bmrb.wisc.edu/bmrb/Entry_ID/html returns HTML summary page for BMRB entry Entry_ID. For example, http://rest.bmrb.wisc.edu/bmrb/10001/html
• http://rest.bmrb.wisc.edu/bmrb/Entry_ID/nmr-star3 returns BMRB entry Entry_ID in NMR-STAR 3.1 format. For example, http://rest.bmrb.wisc.edu/bmrb/10001/nmr-star3
• http://rest.bmrb.wisc.edu/bmrb/Entry_ID/nmr-star2 returns BMRB entry Entry_ID in NMR-STAR 2.1 format. For example, http://rest.bmrb.wisc.edu/bmrb/10001/nmr-star2

Via residue sequence

Use FASTA search program to find matching residue sequence in BMRB database. http://www.bmrb.wisc.edu/data_access/fasta.php?seq_class=protein&sequence=GIVEQCCT will list all BMRB entries for proteins matching GIVEQ sequence. Accepted values for seq_class parameter are protein and DNA, to search in protein and DNA sequence databases, resp.

Mirror sites

The above will also work for BMRB mirror sites in Osaka, Japan (http://bmrb.protein.osaka-u.ac.jp/) and Florence, Italy (http://bmrb.postgenomicnmr.net/).